PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 513aa    MW: 57613.7 Da    PI: 7.6271
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041128genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS252.41.7e-771224921373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfsh 95 
                  lve Ll+ A+ v+++  ++a+al+    +l+sp+g+p+qR ++yf++AL++r+a+++ +  ++++ +  ++   + +l + ++    +e +P++++++
  Lus10041128 122 LVEYLLSSADRVAHNRYHEATALIDLCDHLSSPTGNPVQRTVHYFARALRERVAGETGSDQSTCTINLLDD--DVFRLPSPSVllsVHERFPYFRMQQ 217
                  5789***************************************************5555555555555553..33333333333348999******** PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  l++ q + e++++++++H iD++i+ G++W+ ++qaL +Rp  ++   l +T++     g  e++e+tge L++fA++ +v+f f+++ ++++++l+ 
  Lus10041128 218 LATVQPMAESAATARKIHCIDLNIKSGIHWIGFMQALETRPdnHKLDLLNVTALCV---GPVERVESTGEWLTDFARAKRVNFCFKIVRVDDVAELDE 312
                  *****************************************54445599****998...89************************************* PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEre 288
                  +++ v ++Ea+ V + ++   +l ++  +e     +++++++l+P+++vv+e e +hns+ F +rf+eal +y a fds+ea ++re+   r+ +E  
  Lus10041128 313 KMFGVGEKEAVLVYSEHSFSAMLGKPDRIEA----LMSAIRRLNPQLMVVTEMEGNHNSSHFGTRFVEALFHYGAAFDSVEACVGREDdVSRRAMEGG 406
                  **********************966666666....***************************************************997899****** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ++gr i nvvaceg+er+ r  +le Wr  ++++ + + +ls+ + +q++l+ ++   ++  +ve + + +++gWk+ pL+s+S W
  Lus10041128 407 MMGRMIGNVVACEGRERVIRGVRLEIWRTFFKRFEMVEKRLSTVTWQQMRLVHETACnGRFSTVERDGKGMLIGWKGTPLMSISTW 492
                  ********************************************9999998877766355466667777777************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.61696472IPR005202Transcription factor GRAS
PfamPF035145.7E-75122492IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MADKDYDVQA QTLGDFSSER MRNINNMPAM TSAATPFQLL TNHDNRSSSS SSSTMTNFMS  60
SAGRKSRQAS PLSIMETINL AAKRILQCSN NSTQVGIPSS LNVHFDPSII GVSFHDQKNV  120
ELVEYLLSSA DRVAHNRYHE ATALIDLCDH LSSPTGNPVQ RTVHYFARAL RERVAGETGS  180
DQSTCTINLL DDDVFRLPSP SVLLSVHERF PYFRMQQLAT VQPMAESAAT ARKIHCIDLN  240
IKSGIHWIGF MQALETRPDN HKLDLLNVTA LCVGPVERVE STGEWLTDFA RAKRVNFCFK  300
IVRVDDVAEL DEKMFGVGEK EAVLVYSEHS FSAMLGKPDR IEALMSAIRR LNPQLMVVTE  360
MEGNHNSSHF GTRFVEALFH YGAAFDSVEA CVGREDDVSR RAMEGGMMGR MIGNVVACEG  420
RERVIRGVRL EIWRTFFKRF EMVEKRLSTV TWQQMRLVHE TACNGRFSTV ERDGKGMLIG  480
WKGTPLMSIS TWNFFRSAKL VPGRKHLRVE FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2815649237374GRAS family transcription factor containing p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-41RGA-like 1